I did it the old-fashioned way (os.system is going to be deprecated):
import os
os.system("~/ds9 -zoom 0.3 -scale mode 99.5 -file "+
GalaxyParameters.getSDSSUrl(listFile, dataDir, i) +" -file "+
GalaxyParameters.getMaskUrl(listFile, dataDir, simpleFile, i) +" -match frames")
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